PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7828s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 363aa    MW: 40383.2 Da    PI: 7.023
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7828s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.13.2e-3426135189
                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec..ea 75 
                          a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l                +++++s      
  Araha.7828s0002.1.p  26 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLEIGettttttarqepvNTKPESPNlvF- 114
                          589**********************************************************9866444443333333322222111111. PP

                  TCP  76 esssssasnsssg................k 89 
                           +++        +                 
  Araha.7828s0002.1.p 115 -QRE--------NndqtqfvaanldsedaM 135
                          .111........111222233333333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-2927128IPR005333Transcription factor, TCP
PROSITE profilePS5136932.2972987IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV  60
QDRLGYDRPS KAVDWLIKKA KTAIDKLEIG ETTTTTTARQ EPVNTKPESP NLVFQRENND  120
QTQFVAANLD SEDAMKTFFP ATTTTNGGGG GSNMNFQNYP HHDDDNMVSR TTTTTPNLSQ  180
DLGLSLHPFQ GNNNTVVVPE NNNFTTNHFD TFGRISGWNH PDLTMTSSSS LEHQQQEQEE  240
RSNGGFMVNH HPHHHHHQPS MMTLLNSQQQ QVFLGGHQQQ QQRGTLQSSL FPHSFRSWDH  300
HPTVSDHHHQ NQASSMFASS SQFGSHGMMM MQGLSFPNTT RLLHGEESTQ PNSSSSPPNS  360
HL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053110.0AC005311.3 Arabidopsis thaliana chromosome 2 clone T16B12 map m283, complete sequence.
GenBankAY0599450.0AY059945.1 Arabidopsis thaliana Unknown protein (At2g31070; T16B12.12) mRNA, complete cds.
GenBankBT0011940.0BT001194.1 Arabidopsis thaliana Unknown protein (At2g31070) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881153.10.0hypothetical protein ARALYDRAFT_902126
SwissprotO822770.0TCP10_ARATH; Transcription factor TCP10
TrEMBLD7LCY30.0D7LCY3_ARALL; Putative uncharacterized protein
STRINGscaffold_401627.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-142TCP domain protein 10